Publications
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2025
Raab R. , Berrang P. , Gerhart P. , Schröder D. :SoK: Descriptive Statistics Under Local Differential Privacy Proceedings on Privacy Enhancing Technologies 2025 2025 ), p. 118-149 ISSN: 2299-0984 10.56553/popets-2025-0008 Rivera Monroy L. , Rist L. , Ostalecki C. , Bauer A. , Vera González J. , Breininger K. , Maier A. :Graph Neural Networks in Multi-Stained Pathological Imaging: Extended Comparative Analysis of Radiomic Features 2025 )10.21203/rs.3.rs-4241891/v1 Wilm F. , Ammeling J. , Öttl M. , Fick RHJ. , Aubreville M. , Breininger K. :Rethinking U-net Skip Connections for Biomedical Image Segmentation 2025 )10.48550/arXiv.2402.08276 Öttl M. , Mei S. , Wilm F. , Steenpaß J. , Rübner M. , Hartmann A. , Beckmann M. , Fasching P. , Maier A. , Erber R. , Breininger K. :Analysing Diffusion Segmentation for Medical Images 2025 )10.48550/arXiv.2403.14440 Mathias Öttl, Frauke Wilm, Jana Steenpass, Jingna Qiu, Matthias Rübner, Arndt Hartmann, Matthias Beckmann, Peter Fasching, Andreas Maier, Ramona Erber, Bernhard Kainz, Katharina Breininger:Style-Extracting Diffusion Models for Semi-Supervised Histopathology Segmentation 2025 )10.48550/arXiv.2403.14429
2024
Abdelaal M. , Yayak AB. , Klede K. , Schöning H. :ReClean: Reinforcement Learning for Automated Data Cleaning in ML Pipelines 3rd International Workshop on Databases and Machine Learning (Utrecht 13. May 2024 - 13. May 2024 )https://www.wis.ewi.tudelft.nl/assets/files/dbml2024/DBML24_paper_11.pdf https://www.wis.ewi.tudelft.nl/assets/files/dbml2024/DBML24_paper_11.pdf Abel L. , Richer R. , Hauck F. , Kurz M. , Ringgold V. , Schindler-Gmelch L. , Eskofier B. , Rohleder N. :Does acute stress exposure change gait patterns? Psychoneuroendocrinology 160 2024 ), Article No.: 106818 ISSN: 0306-4530 10.1016/j.psyneuen.2023.106818 Ahmed K. , Taheri S. , Weygers I. , Ortiz-Catalan M. :Validation of IMU against optical reference and development of open-source pipeline: proof of concept case report in a participant with transfemoral amputation fitted with a Percutaneous Osseointegrated Implant Journal of neuroEngineering and rehabilitation 21 2024 ), Article No.: 128 ISSN: 1743-0003 10.1186/s12984-024-01426-6 Albert T. , Eskofier B. , Zanca D. :From patches to objects: exploiting spatial reasoning for better visual representations Discover Applied Sciences 6 2024 ), Article No.: 232 ISSN: 3004-9261 10.1007/s42452-024-05894-2 Albrecht N. , Langer D. , Krauß D. , Richer R. , Abel L. , Eskofier B. , Rohleder N. , Kölpin A. :EmRad: Ubiquitous Vital Sign Sensing using Compact Continuous-Wave Radars IEEE Open Journal of Engineering in Medicine and Biology 2024 ), p. 1-10 ISSN: 2644-1276 10.1109/OJEMB.2024.3420241 https://ieeexplore.ieee.org/document/10577086 Altmannshofer S. , Flaucher M. , Beierlein M. , Eskofier B. , Beckmann M. , Fasching P. , Hübner H. :A content-based review of mobile health applications for breast cancer prevention and education: Characteristics, quality and functionality analysis Digital Health 10 2024 )ISSN: 2055-2076 10.1177/20552076241234627 Amsel D. , Vornehm M. , Wetzl J. , Schmidt M. , Tillmanns C. , Gebker R. , Giese D. , Knoll F. , Kuestner T. :Deep learning-based image reconstruction for higher resolution cardiac T1 mapping 2024 ISMRM & ISMRT Annual Meeting & Exhibition (Singapore 4. May 2024 - 9. May 2024 )In: Proceedings of the International Society for Magnetic Resonance in Medicine 2024 Angius L. , Del Vecchio A. , Goodall S. , Thomas K. , Ansdell P. , Atkinson E. , Farina D. , Howatson G. :Supraspinal, spinal, and motor unit adjustments to fatiguing isometric contractions of the knee extensors at low and high submaximal intensities in males Journal of Applied Physiology 136 2024 ), p. 1546-1558 ISSN: 8750-7587 10.1152/japplphysiol.00675.2023 Aubreville M. , Pan Z. , Sievert M. , Ammeling J. , Ganz J. , Oetter N. , Stelzle F. , Frenken AK. , Breininger K. , Goncalves M. :Few Shot Learning for the Classification of Confocal Laser Endomicroscopy Images of Head and Neck Tumors German Conference on Medical Image Computing, BVM 2024 (Erlangen 10. March 2024 - 12. March 2024 )In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2024. BVM 2024 , Wiesbaden 2024 10.1007/978-3-658-44037-4_42 Aubreville M. , Stathonikos N. , Donovan TA. , Klopfleisch R. , Ammeling J. , Ganz J. , Wilm F. , Veta M. , Jabari S. , Eckstein M. , Annuscheit J. , Krumnow C. , Bozaba E. , Çayır S. , Gu H. , Chen X‘. , Jahanifar M. , Shephard A. , Kondo S. , Kasai S. , Kotte S. , Saipradeep VG. , Lafarge MW. , Koelzer VH. , Wang Z. , Zhang Y. , Yang S. , Wang X. , Breininger K. , Bertram CA. :Domain generalization across tumor types, laboratories, and species — Insights from the 2022 edition of the Mitosis Domain Generalization Challenge Medical Image Analysis 94 2024 ), Article No.: 103155 ISSN: 1361-8415 10.1016/j.media.2024.103155 Aubreville M. , Wilm F. , Stathonikos N. , Breininger K. , Donovan TA. , Jabari S. , Veta M. , Ganz J. , Ammeling J. , van Diest PJ. , Klopfleisch R. , Bertram CA. :Author Correction: A comprehensive multi-domain dataset for mitotic figure detection (Scientific Data, (2023), 10, 1, (484), 10.1038/s41597-023-02327-4) Scientific Data 11 2024 ), Article No.: 717 ISSN: 2052-4463 10.1038/s41597-024-03548-x Auernheimer J. , Reichenbach T. :Estimation of the Neural Sources of the EEG-measured Speech-FFR using a Phenomenological Model of Auditory-nerve Fiber Responses 32nd European Signal Processing Conference, EUSIPCO 2024 (Lyon, FRA 26. August 2024 - 30. August 2024 )In: European Signal Processing Conference 2024 Ayde R. , Vornehm M. , Zhao Y. , Knoll F. , Wu EX. , Sarracanie M. :MRI at low field: A review of software solutions for improving SNR NMR in Biomedicine 2024 )ISSN: 0952-3480 10.1002/nbm.5268 Azampour MF. , Mach K. , Fatemizadeh E. , Demiray B. , Westenfelder K. , Steiger K. , Eiber M. , Wendler T. , Kainz B. , Navab N. :Multitask Weakly Supervised Generative Network for MR-US Registration IEEE Transactions on Medical Imaging 2024 ), p. 1-1 ISSN: 0278-0062 10.1109/TMI.2024.3400899 Bae J. , Tan Z. , Solomon E. , Huang Z. , Heacock L. , Moy L. , Knoll F. , Kim SG. :Digital reference object toolkit of breast DCE MRI for quantitative evaluation of image reconstruction and analysis methods Magnetic Resonance in Medicine 2024 )ISSN: 0740-3194 10.1002/mrm.30152 Bernett J. , Blumenthal DB. , Grimm DG. , Haselbeck F. , Joeres R. , Kalinina OV. , List M. :Guiding questions to avoid data leakage in biological machine learning applications Nature Methods 21 2024 ), p. 1444-1453 ISSN: 1548-7091 10.1038/s41592-024-02362-y Bernett J. , Blumenthal DB. , List M. :Cracking the black box of deep sequence-based protein-protein interaction prediction Briefings in Bioinformatics 25 2024 ), Article No.: bbae076 ISSN: 1467-5463 10.1093/bib/bbae076 Brock L. , Ben-Atya H. , Saar G. , Folle L. , Maier A. , Vandoorne K. , Freiman M. :T2 Distribution Analysis of Inflamed Bone Marrow Compartments in MR Images with Quantitative T2-mapping 2024 ISMRM & ISMRT Annual Meeting & Exhibition (Singapore 4. May 2024 - 9. May 2024 )Brock L. , Liebert A. , Schreiter H. , Ehring C. , Eberle J. , Laun FB. , Uder M. , Kapsner L. , Ohlmeyer S. , Knoll F. , Bickelhaupt S. :How to best match voxels - evaluating different sequential co-registration strategies for ultra-high b-value DWI in multiparametric breast MRI 2024 ISMRM & ISMRT Annual Meeting & Exhibition (Singapore 4. May 2024 - 9. May 2024 )Cabral HV. , Cudicio A. , Bonardi A. , Del Vecchio A. , Falciati L. , Orizio C. , Martinez-Valdes E. , Negro F. :Neural Filtering of Physiological Tremor Oscillations to Spinal Motor Neurons Mediates Short-Term Acquisition of a Skill Learning Task eNeuro 11 2024 ), Article No.: ENEURO.0043-24.2024 ISSN: 2373-2822 10.1523/ENEURO.0043-24.2024 Cramer E. , Kucharski AB. , Kreimeier J. , Andreß S. , Li S. , Walk C. , Merkl F. , Högl J. , Wucherer P. , Stefan P. , von Eisenhart-Rothe R. , Enste P. , Roth D. :Requirement analysis for an AI-based AR assistance system for surgical tools in the operating room: stakeholder requirements and technical perspectives International Journal of Computer Assisted Radiology and Surgery 2024 )ISSN: 1861-6410 10.1007/s11548-024-03193-0 Darvish M. , Kist A. :A Generative Method for a Laryngeal Biosignal Journal of Voice 2024 )ISSN: 0892-1997 10.1016/j.jvoice.2024.01.016 Day TG. , Matthew J. , Budd S. , Venturini L. , Wright R. , Farruggia A. , Jamshidi B. , Syngelaki A. , Ling H. , Tan M. , Lai J. , Brown M. , To M. , Guy GP. , Arechvo A. , Casagrandi D. , Akolekar R. , Nanda S. , Nicolaides K. , Kainz B. , Simpson J. , Hajnal J. , Razavi R. :Artificial intelligence to assist in the screening fetal anomaly ultrasound scan (PROMETHEUS): a randomised controlled trial 34th World Congress on Ultrasound in Obstetrics and Gynecology (Budapest 15. September 2024 - 18. September 2024 )In: Abstracts of the 34th World Congress on Ultrasound in Obstetrics and Gynecology, 15–18 September 2024, Budapest, Hungary 2024 10.1002/uog.28023 Del Vecchio A. , Enoka RM. , Farina D. :Specificity of early motor unit adaptations with resistive exercise training The Journal of Physiology 2024 )ISSN: 0022-3751 10.1113/JP282560 Dietz S. , Altstidl TR. , Zanca D. , Eskofier B. , Nguyen A. :How Intermodal Interaction Affects the Performance of Deep Multimodal Fusion for Mixed-Type Time Series International Joint Conference on Neural Networks (IJCNN) (Yokohama 30. June 2024 - 5. July 2024 )10.1109/IJCNN60899.2024.10650421 https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=10650421 Dombrowski M. , Reynaud H. , Müller J. , Baugh M. , Kainz B. :Trade-Offs in Fine-Tuned Diffusion Models between Accuracy and Interpretability 38th AAAI Conference on Artificial Intelligence, AAAI 2024 (Vancouver 20. February 2024 - 27. February 2024 )In: Association for the Advancement of Artificial Intelligence (ed.): AAAI-24 Special Track Safe, Robust and Responsible AI Track , Washington, DC 2024 10.1609/aaai.v38i19.30095 Dumbach P. :Adoption of Artificial Intelligence in Industry and Politics: An Analysis Based on Web Mining and Case Studies across Diverse Data Sources 2024 )https://open.fau.de/handle/openfau/31160 Eshghi S. , Rajabi H. , Shafaghi S. , Nabati F. , Nazerian S. , Darvizeh A. , Gorb SN. :Allometric Scaling Reveals Evolutionary Constraint on Odonata Wing Cellularity via Critical Crack Length Advanced Science 2024 )ISSN: 2198-3844 10.1002/advs.202400844 Eskofier B. , Vossiek M. :Invisible Sensing: Radar-based Biomonitoring IEEE Open Journal of Engineering in Medicine and Biology 2024 ), p. 1-2 ISSN: 2644-1276 10.1109/OJEMB.2024.3409086 Fan F. , Qiu J. , Huang Y. , Maier A. :Enhancing Cross-Modality Synthesis: Subvolume Merging for MRI-to-CT Conversion The 8th International Conference on Image Formation in X-Ray Computed Tomography (Bamberg, Germany 5. August 2024 - 9. August 2024 )10.48550/arXiv.2409.05982 https://arxiv.org/pdf/2409.05982 Fernholz MH. , Guggiana Nilo DA. , Bonhoeffer T. , Kist A. :DeepD3, an open framework for automated quantification of dendritic spines PLoS Computational Biology 20 2024 ), Article No.: e1011774 ISSN: 1553-734X 10.1371/journal.pcbi.1011774 Fischer N. , Ho P. , Marzi C. , Schuler P. , Mathis-Ullrich F. :A Laryngoscope with Shape Memory Actuation Current Directions in Biomedical Engineering 10 2024 ), p. 58-61 ISSN: 2364-5504 10.1515/cdbme-2024-1067 Flaucher M. , Prümer F. , Jäger K. , Rolny J. , Trissler P. , Eckl S. , Eskofier B. , Leutheuser H. :Motivational Factors for Experienced Users of Mobile Health Applications in Heart Failure Management 2024 Nordic Conference on Human-Computer Interaction (Uppsala 13. October 2024 - 16. October 2024 )In: NordiCHI '24 Adjunct: Adjunct Proceedings of the 2024 Nordic Conference on Human-Computer Interaction , New York City 2024 10.1145/3677045.3685447 Foltyn A. , Deuschel J. , Lang-Richter NR. , Holzer N. , Oppelt M. :Evaluating the robustness of multimodal task load estimation models Frontiers in Computer Science 6 2024 ), Article No.: 1371181 ISSN: 2624-9898 10.3389/fcomp.2024.1371181 Förstel S. , Förstel M. , Gallistl M. , Zanca D. , Eskofier B. , Rothgang EM. :Data quality in hospital information systems: Lessons learned from analyzing 30 years of patient data in a regional German hospital International Journal of Medical Informatics 192 2024 ), Article No.: 105636 ISSN: 1386-5056 10.1016/j.ijmedinf.2024.105636 Fürnrohr F. , Wetzl J. , Vornehm M. , Giese D. , Knoll F. :Data Consistent Variational Networks for Zero-shot Self-supervised MR Reconstruction Bildverarbeitung für die Medizin 2024 (Erlangen 10. March 2024 - 12. March 2024 )In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2024 , Wiesbaden 2024 10.1007/978-3-658-44037-4_81 Galindez G. , List M. , Baumbach J. , Völker U. , Mäder U. , Blumenthal DB. , Kacprowski T. :Inference of differential gene regulatory networks using boosted differential trees Bioinformatics Advances 4 2024 ), Article No.: vbae034 ISSN: 2635-0041 10.1093/bioadv/vbae034 Gambietz M. , Dröge A. , Schüßler C. , Stahlke M. , Wirth V. , Miehling J. , Koelewijn A. :Unobtrusive Gait Reconstructions using Radar-based Optimal Control Simulations Asilomar Conference on Signals, Systems, and Computers Ganz J. , Puget C. , Ammeling J. , Parlak E. , Kiupel M. , Bertram CA. , Breininger K. , Klopfleisch R. , Aubreville M. :Assessment of Scanner Domain Shifts in Deep Multiple Instance Learning German Conference on Medical Image Computing, BVM 2024 (Erlangen 10. March 2024 - 12. March 2024 )In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2024. BVM 2024 , Wiesbaden 2024 10.1007/978-3-658-44037-4_41 Giurgiu M. , Wittstruck N. , Rodriguez-Fos E. , González RC. , Brückner L. , Krienelke-Szymansky A. , Helmsauer K. , Hartebrodt A. , Euskirchen P. , Koche RP. , Haase K. , Reinert K. , Henssen AG. :Decoil: Reconstructing Extrachromosomal DNA Structural Heterogeneity from Long-Read Sequencing Data 28th International Conference on Research in Computational Molecular Biology, RECOMB 2024 (Cambridge, MA 29. April 2024 - 2. May 2024 )In: Jian Ma (ed.): Research in Computational Molecular Biology. 28th Annual International Conference, RECOMB 2024, Cambridge, MA, USA, April 29–May 2, 2024, Proceedings , Cham 2024 10.1007/978-1-0716-3989-4_41 Gomaa A. , Huang Y. , Hagag A. , Schmitter C. , Höfler D. , Weissmann T. , Breininger K. , Schmidt M. , Stritzelberger J. , Delev D. , Coras R. , Dörfler A. , Schnell O. , Frey B. , Gaipl U. , Semrau S. , Bert C. , Hau P. , Fietkau R. , Putz F. :Comprehensive Multimodal Deep Learning Survival Prediction Enabled by a Transformer Architecture: A Multicenter Study in Glioblastoma Neuro-Oncology Advances 2024 )ISSN: 2632-2498 10.1093/noajnl/vdae122 Goodlich BI. , Pearcey GE. , Del Vecchio A. , Horan SA. , Kavanagh JJ. :Antagonism of 5-HT2 receptors attenuates self-sustained firing of human motor units The Journal of Physiology 2024 )ISSN: 0022-3751 10.1113/JP285867 Groh R. , Goes N. , Kist A. :SpokeN-100: A Cross-Lingual Benchmarking Dataset for The Classification of Spoken Numbers in Different Languages tinyML Research Symposium 2024 (Burlingame, CA 22. April 2024 - 22. April 2024 )10.48550/arXiv.2403.09753 Groh R. , Li JY. , Li-Jessen NY. , Kist A. :ANNOTE: Annotation of time-series events Software Impacts 21 2024 ), Article No.: 100679 ISSN: 2665-9638 10.1016/j.simpa.2024.100679 Grube L. , Petit P. , Vuillerme N. , Nitschke M. , Nwosu OB. , Knitza J. , Krusche M. , Seifer AK. , Eskofier B. , Schett G. , Morf H. :Complementary App-Based Yoga Home Exercise Therapy for Patients With Axial Spondyloarthritis: Usability Study JMIR Formative Research 8 2024 ), Article No.: e57185 ISSN: 2561-326X 10.2196/57185 Gösche E. , Eghbali R. , Knoll F. , Rauschecker AM. :Domain Influence in MRI Medical Image Segmentation: Spatial Versus k-Space Inputs 15th International Workshop on Machine Learning in Medical Imaging, Held in Conjunction with MICCAI 2024 (Marrakesh 6. October 2024 - 6. October 2024 )In: Xuanang Xu, Zhiming Cui, Islem Rekik, Xi Ouyang, Kaicong Sun (ed.): Machine Learning in Medical Imaging , Cham 2024 10.1007/978-3-031-73284-3_31 https://link.springer.com/chapter/10.1007/978-3-031-73284-3_31 Hartebrodt A. , Röttger R. , Blumenthal DB. :Federated singular value decomposition for high-dimensional data Data Mining and Knowledge Discovery 38 2024 ), p. 938 - 975 ISSN: 1573-756X 10.1007/s10618-023-00983-z Hauser SL. , Brosig J. , Murthy B. , Attardo A. , Kist A. :Implicit neural representations in light microscopy Biomedical Optics Express 15 2024 ), p. 2175-2186 ISSN: 2156-7085 10.1364/BOE.515517 Hecht M. , Frey B. , Gaipl U. , Tianyu X. , Eckstein M. , Donaubauer AJ. , Klautke G. , Illmer T. , Fleischmann M. , Laban S. , Hautmann MG. , Tamaskovics B. , Brunner TB. , Becker I. , Zhou J. , Hartmann A. , Fietkau R. , Iro H. , Döllinger M. , Gostian AO. , Kist A. :Machine Learning-assisted immunophenotyping of peripheral blood identifies innate immune cells as best predictor of response to induction chemo-immunotherapy in head and neck squamous cell carcinoma – knowledge obtained from the CheckRad-CD8 trial Neoplasia 49 2024 ), Article No.: 100953 ISSN: 1522-8002 10.1016/j.neo.2023.100953 Henrich P. , Gyenes B. , Scheikl P. , Neumann G. , Mathis-Ullrich F. :Registered and Segmented Deformable Object Reconstruction from a Single View Point Cloud 2024 IEEE Winter Conference on Applications of Computer Vision, WACV 2024 (Waikoloa, HI 4. January 2024 - 8. January 2024 )In: Proceedings - 2024 IEEE Winter Conference on Applications of Computer Vision, WACV 2024 2024 10.1109/WACV57701.2024.00310 Hernandez A. , Perez Toro PA. , Arias-Vergara T. , Vasquez-Correa JC. , Yang SH. , Orozco-Arroyave JR. , Maier A. :Anonymizing Dysarthric Speech: Investigating the Effects of Voice Conversion on Pathological Information Preservation 27th International Conference on Text, Speech, and Dialogue, TSD 2024 (Brno, CZE 9. September 2024 - 13. September 2024 )In: Elmar Nöth, Aleš Horák, Petr Sojka (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024 10.1007/978-3-031-70566-3_14 Hoffmann M. , Poschenrieder JM. , Incudini M. , Baier S. , Fritz A. , Maier A. , Hartung M. , Hoffmann C. , Trummer N. , Adamowicz K. , Picciani M. , Scheibling E. , Harl MV. , Lesch I. , Frey H. , Kayser S. , Wissenberg P. , Schwartz L. , Hafner L. , Acharya A. , Hackl L. , Grabert G. , Lee SG. , Cho G. , Cloward ME. , Jankowski J. , Lee HK. , Tsoy O. , Wenke N. , Pedersen AG. , Bønnelykke K. , Mandarino A. , Melograna F. , Schulz L. , Climente-González H. , Wilhelm M. , Iapichino L. , Wienbrandt L. , Ellinghaus D. , Van Steen K. , Grossi M. , Furth PA. , Hennighausen L. , Di Pierro A. , Baumbach J. , Kacprowski T. , List M. , Blumenthal DB. :Network medicine-based epistasis detection in complex diseases: Ready for quantum computing Nucleic Acids Research 52 2024 ), p. 10144-10160 ISSN: 0305-1048 10.1093/nar/gkae697 Huijben EM. , Terpstra ML. , Galapon AJ. , Pai S. , Thummerer A. , Koopmans P. , Afonso M. , van Eijnatten M. , Gurney-Champion O. , Chen Z. , Zhang Y. , Zheng K. , Li C. , Pang H. , Ye C. , Wang R. , Song T. , Fan F. , Qiu J. , Huang Y. , Ha J. , Sung Park J. , Alain-Beaudoin A. , Bériault S. , Yu P. , Guo H. , Huang Z. , Li G. , Zhang X. , Fan Y. , Liu H. , Xin B. , Nicolson A. , Zhong L. , Deng Z. , Müller-Franzes G. , Khader F. , Li X. , Zhang Y. , Hémon C. , Boussot V. , Zhang Z. , Wang L. , Bai L. , Wang S. , Mus D. , Kooiman B. , Sargeant CA. , Henderson EG. , Kondo S. , Kasai S. , Karimzadeh R. , Ibragimov B. , Helfer T. , Dafflon J. , Chen Z. , Wang E. , Perko Z. , Maspero M. :Generating synthetic computed tomography for radiotherapy: SynthRAD2023 challenge report Medical Image Analysis 97 2024 ), Article No.: 103276 ISSN: 1361-8415 10.1016/j.media.2024.103276 Ibrahim A. , Ollenschläger M. , Klebe S. , Schüle R. , Jeschonneck N. , Kellner M. , Loris E. , Greinwalder T. , Eskofier B. , Winkler J. , Gaßner H. , Regensburger M. :Mobile digital gait analysis captures effects of botulinum toxin in hereditary spastic paraplegia European Journal of Neurology 2024 )ISSN: 1351-5101 10.1111/ene.16367 Jäger K. , Nissen M. , Rahm S. , Titzmann A. , Fasching P. , Beilner J. , Eskofier B. , Leutheuser H. :Power-MF: Robust fetal QRS detection from non-invasive fetal electrocardiogram recordings Physiological Measurement 2024 )ISSN: 0967-3334 10.1088/1361-6579/ad4952 Keinert M. , Schindler-Gmelch L. , Eskofier B. , Berking M. :An Anger-based Approach-Avoidance Modification Training Targeting Dysfunctional Beliefs in Adults with Elevated Stress – Results from a Randomized Controlled Pilot Study International Journal of Cognitive Therapy 2024 )ISSN: 1937-1209 10.1007/s41811-024-00218-z Keshavarzi M. , Salorio-Corbetto M. , Reichenbach T. , Marriage J. , Moore BC. :Development of New Open-Set Speech Material for Use in Clinical Audiology with Speakers of British English Audiology Research 14 2024 ), p. 264-279 ISSN: 2039-4349 10.3390/audiolres14020024 Khnaisser C. , Hamrouni H. , Blumenthal DB. , Dignös A. , Gamper J. :Efficiently Labeling and Retrieving Temporal Anomalies in Relational Databases Information Systems Frontiers 2024 )ISSN: 1387-3326 10.1007/s10796-024-10495-w Kim J. , Nickel MD. , Knoll F. :Assessment of Deep Learning-based Reconstruction with Imperfect Ground Truth for MRCP International Federation of Information Processing (IFIP) Technical Committee - 7 (TC-7) "System Modeling and Optimization" conferences (Hamburg, Germany 12. August 2024 - 16. August 2024 )In: Assessment of Deep Learning-based Reconstruction with Imperfect Ground Truth for MRCP 2024 Kim J. , Nickel MD. , Knoll F. :Deep Learning-based Reconstruction of Accelerated MR Cholangiopancreatography 2024 ISMRM & ISMRT Annual Meeting & Exhibition (Singapore 4. May 2024 - 9. 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2020
Blumenthal DB. , Baumbach J. , Hoffmann M. , Kacprowski T. , List M. :A framework for modeling epistatic interaction Bioinformatics 37 2020 ), p. 1708 - 1716 ISSN: 1367-4803 10.1093/bioinformatics/btaa990 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa990/6012351?guestAccessKey=4683fb7f-7afc-4b9c-b0d5-3d0085904eb4 Blumenthal DB. , Boria N. , Gamper J. , Bougleux S. , Brun L. :Comparing heuristics for graph edit distance computation Vldb Journal 29 2020 ), p. 419-458 ISSN: 1066-8888 10.1007/s00778-019-00544-1 Blumenthal DB. , Gamper J. :On the exact computation of the graph edit distance Pattern Recognition Letters 134 2020 ), p. 46-57 ISSN: 0167-8655 10.1016/j.patrec.2018.05.002 Blumenthal DB. , Viola L. , List M. , Baumbach J. , Tieri P. , Kacprowski T. :EpiGEN: An epistasis simulation pipeline Bioinformatics 36 2020 ), p. 4957-4959 ISSN: 1367-4803 10.1093/bioinformatics/btaa245 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa245/5820008?guestAccessKey=2385c5f1-6587-4065-b2f2-1039765fa5b6 Boria N. , Blumenthal DB. , Bougleux S. , Brun L. :Improved local search for graph edit distance Pattern Recognition Letters 129 2020 ), p. 19-25 ISSN: 0167-8655 10.1016/j.patrec.2019.10.028 Bougleux S. , Gauzere B. , Blumenthal DB. , Brun L. :Fast linear sum assignment with error-correction and no cost constraints Pattern Recognition Letters 134 2020 ), p. 37-45 ISSN: 0167-8655 10.1016/j.patrec.2018.03.032 Chondrogiannis T. , Bouros P. , Gamper J. , Leser U. , Blumenthal DB. :Finding k-shortest paths with limited overlap Vldb Journal 2020 )ISSN: 1066-8888 10.1007/s00778-020-00604-x Del Vecchio A. , Sylos-Labini F. , Mondi V. , Paolillo P. , Ivanenko Y. , Lacquaniti F. , Farina D. :Spinal motoneurons of the human newborn are highly synchronized during leg movements Science Advances 6 2020 ), p. eabc3916 ISSN: 2375-2548 10.1126/sciadv.abc3916 Feigl T. , Gruner L. , Mutschler C. , Roth D. :Real-Time Gait Reconstruction for Virtual Reality Using a Single Sensor 2020 IEEE International Symposium on Mixed and Augmented Reality, ISMAR-Adjunct 2020 (Ipojuca, Pernambuco 9. November 2020 - 13. November 2020 )In: Adjunct Proceedings of the 2020 IEEE International Symposium on Mixed and Augmented Reality, ISMAR-Adjunct 2020 2020 10.1109/ISMAR-Adjunct51615.2020.00037 Felici F. , Del Vecchio A. :Surface Electromyography: What Limits Its Use in Exercise and Sport Physiology? Frontiers in Neurology 11 2020 ), Article No.: 578504 ISSN: 1664-2295 10.3389/fneur.2020.578504 Gradl S. :The Stroop Room : A Wearable Virtual Reality Stress Laboratory Based on the Electrocardiogram 2020 )https://opus4.kobv.de/opus4-fau/frontdoor/index/index/docId/15434 Helmer S. , Blumenthal DB. , Paschen K. :What is meaningful research and how should we measure it? Scientometrics 125 2020 ), p. 153-169 ISSN: 0138-9130 10.1007/s11192-020-03649-5 Koch R. , Pfeiffer N. , Lang N. , Struck M. , Amft O. , Eskofier B. , Wittenberg T. :Evaluation of HRV estimation algorithms from PPG data using neural networks Current Directions in Biomedical Engineering 6 2020 ), Article No.: 20203130 ISSN: 2364-5504 10.1515/cdbme-2020-3130 https://www.degruyter.com/document/doi/10.1515/cdbme-2020-3130/html Köferl F. , Link J. , Eskofier B. :Application of SORT on Multi-Object Tracking and Segmentation Conference on Computer Vision and Pattern Recognition;
5th BMTT MOTChallenge Workshop: Multi-Object Tracking and Segmentation (Seattle, WA, USA (Virtual) 19. June 2020 - 19. June 2020 )https://motchallenge.net/workshops/bmtt2020/papers/Application_and_Adaptations_of_SORT_on_MOTS20.pdf Lazareva O. , Canzar S. , Yuan K. , Baumbach J. , Blumenthal DB. , Tieri P. , Kacprowski T. , List M. :BiCoN: Network-constrained biclustering of patients and omics data Bioinformatics 37 2020 ), p. 2398 - 2404 ISSN: 1367-4803 10.1093/bioinformatics/btaa1076 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa1076/6050718?guestAccessKey=e2e9cb2b-ac3d-44a6-abc7-2b92ae15d34c Löffler C. , Nickel C. , Sobel C. , Daniel D. , Braat J. , Gruhler B. , Woller P. , Witt N. , Mutschler C. :Automated Quality Assurance for Hand-held Tools via Embedded Classification and AutoML European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD) (Virtual (Ghent, Belgium) 14. September 2020 - 18. September 2020 )10.1007/978-3-030-67670-4_33 Maier A. , Christlein V. , Breininger K. , Wuerfl T. , Unberath M. , Rieß C. :Bildanalyse In: Günther Görz, Ute Schmid, Tanya Braun (ed.): Handbuch der Künstichen Intelligenz De Gruyter 2020 , p. 673--712 10.1515/9783110659948-015 Matschinske J. , Salgado-Albarran M. , Sadegh S. , Bongiovanni D. , Baumbach J. , Blumenthal DB. :Individuating Possibly Repurposable Drugs and Drug Targets for COVID-19 Treatment through Hypothesis-Driven Systems Medicine Using CoVex Assay and Drug Development Technologies 18 2020 ), p. 348-355 ISSN: 1540-658X 10.1089/adt.2020.1010 Mehringer W. , Wirth M. , Gradl S. , Durner L. , Ring M. , Laudanski AF. , Eskofier B. , Michelson G. :An Image-Based Method for Measuring Strabismus in Virtual Reality 2020 IEEE International Symposium on Mixed and Augmented Reality (ISMAR) (Recife 9. November 2020 - 13. November 2020 )In: IEEE (ed.): 2020 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct) 2020 10.1109/ISMAR-Adjunct51615.2020.00018 Mishra A. , Löffler C. , Plinge A. :Recipes for Post-training Quantization of Deep Neural Networks 6th Workshop on Energy Efficient Machine Learning and Cognitive Computing (EMC^2) (Virtual (from San Jose, California) 5. December 2020 - 5. December 2020 )https://www.emc2-ai.org/assets/docs/virtual-20/emc2-virtual20-paper-8.pdf https://www.emc2-ai.org/assets/docs/virtual-20/emc2-virtual20-paper-8.pdf Rüthlein M. , Köferl F. , Mehringer W. , Eskofier B. :Interactive Segmentation of RGB-D Indoor Scenes using Deep Learning International Conference on Machine Learning;
2nd ICML 2020 Workshop on Human in the Loop Learning (Virtual Conference 18. July 2020 - 18. July 2020 )Sadegh S. , Matschinske J. , Blumenthal DB. , Galindez G. , Kacprowski T. , List M. , Nasirigerdeh R. , Oubounyt M. , Pichlmair A. , Rose TD. , Salgado-Albarran M. , Spaeth J. , Stukalov A. , Wenke NK. , Yuan K. , Pauling JK. , Baumbach J. :Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing Nature Communications 11 2020 ), Article No.: 3518 ISSN: 2041-1723 10.1038/s41467-020-17189-2 Seifer AK. , Schinkel-Bielefeld N. , Schröter H. , Escalante Banuelos A. , Hoppe U. , Maier A. :Predicting Hearing Aid Fittings Based on Audiometric and Subject-Related Data: A Machine Learning Approach Virtual Conference on Computational Audiology (VCCA2020) (Virtual 19. June 2020 - 19. June 2020 )In: Virtual Conference on Computational Audiology (VCCA2020) 2020 https://computationalaudiology.com/predicting-hearing-aid-fittings-based-on-audiometric-and-subject-related-data-a-machine-learning-approach/ Sidoroff V. , Raccagni C. , Kaindlstorfer C. , Eschlboeck S. , Fanciulli A. , Granata R. , Eskofier B. , Seppi K. , Poewe W. , Willeit J. , Kiechl S. , Mahlknecht P. , Stockner H. , Marini K. , Schorr O. , Rungger G. , Klucken J. , Wenning G. , Gaßner H. :Characterization of gait variability in multiple system atrophy and Parkinson's disease Journal of Neurology 2020 )ISSN: 0340-5354 10.1007/s00415-020-10355-y Skarabot J. , Brownstein CG. , Casolo A. , Del Vecchio A. , Ansdell P. :The knowns and unknowns of neural adaptations to resistance training European Journal of Applied Physiology 2020 )ISSN: 1439-6319 10.1007/s00421-020-04567-3 Stahlke M. , Kram S. , Mutschler C. , Mahr T. :NLOS detection using UWB channel impulse responses and convolutional neural networks International Conference on Localization and GNSS (ICL-GNSS) (Tampere 2. June 2020 - 4. June 2020 )10.1109/icl-gnss49876.2020.9115498 Tietsch M. , Muaremi A. , Clay I. , Kluge F. , Hoefling H. , Ullrich M. , Küderle A. , Eskofier B. , Müller A. :Robust Step Detection from Different Waist-Worn Sensor Positions: Implications for Clinical Studies Digital Biomarkers 4 2020 ), p. 50-58 ISSN: 2504-110X 10.1159/000511611 Wehbi M. , Hamann T. , Barth J. , Eskofier B. :Digitizing Handwriting with a Sensor Pen: A Writer-Independent Recognizer 17th International Conference on Frontiers in Handwriting Recognition (ICFHR) (Dortmund 8. September 2020 - 10. September 2020 )10.1109/ICFHR2020.2020.00061 Werner R. , Sentker T. , Madesta F. , Schwarz A. , Vornehm M. , Gauer T. , Hofmann C. :Intelligent 4D CT sequence scanning (i4DCT): First scanner prototype implementation and phantom measurements of automated breathing signal-guided 4D CT Medical Physics 47 2020 ), p. 2408-2412 ISSN: 0094-2405 10.1002/mp.14106
Publications by our professors before the department was established:
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2019
Abel L. , Richer R. , Küderle A. , Gradl S. , Eskofier B. , Rohleder N. :Classification of Acute Stress-Induced Response Patterns EAI International Conference on Pervasive Computing Technologies for Healthcare (PervasiveHealth '19) (Trento 20. May 2019 - 23. May 2019 )10.1145/3329189.3329231 https://www.mad.tf.fau.de/files/2019/05/2019-Abel-PervasiveHealth-StressResponsePatterns.pdf Dorschky E. , Nitschke M. , Seifer AK. , van den Bogert AJ. , Eskofier B. :Estimation of Gait Kinematics and Kinetics from Inertial Sensor Data Using Optimal Control of Musculoskeletal Models Journal of Biomechanics 2019 )ISSN: 0021-9290 10.1016/j.jbiomech.2019.07.022 https://www.mad.tf.fau.de/files/2019/08/201908_JBiomech_Dorschky.pdf
2018
Blumenthal DB. , Bougleux S. , Gamper J. , Brun L. :Ring based approximation of graph edit distance Joint IAPR International Workshops on Structural and Syntactic Pattern Recognition, SSPR 2018 and Statistical Techniques in Pattern Recognition, SPR 2018 (Beijing 17. August 2018 - 19. August 2018 )In: Edwin R. Hancock, Tin Kam Ho, Battista Biggio, Richard C. Wilson, Antonio Robles-Kelly, Xiao Bai (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018 10.1007/978-3-319-97785-0_28 Blumenthal DB. , Daller E. , Bougleux S. , Brun L. , Gamper J. :Quasimetric Graph Edit Distance as a Compact Quadratic Assignment Problem 24th International Conference on Pattern Recognition, ICPR 2018 (Beijing 20. August 2018 - 24. August 2018 )In: Proceedings - International Conference on Pattern Recognition 2018 10.1109/ICPR.2018.8546055 Blumenthal DB. , Gamper J. :Improved lower bounds for graph edit distance IEEE Transactions on Knowledge and Data Engineering 30 2018 ), p. 503-516 ISSN: 1041-4347 10.1109/TKDE.2017.2772243 Chondrogiannis T. , Bouros P. , Gamper J. , Leser U. , Blumenthal DB. :Finding k-dissimilar paths with minimum collective length 26th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, ACM SIGSPATIAL GIS 2018 (Seattle, WA 6. November 2018 - 9. November 2018 )In: Li Xiong, Roberto Tamassia, Kashani Farnoush Banaei, Ralf Hartmut Guting, Erik Hoel (ed.): GIS: Proceedings of the ACM International Symposium on Advances in Geographic Information Systems 2018 10.1145/3274895.3274903 Lloyd DFA, van Poppel M, Schultz A, Pushparajah K, Simpson J, van Amerom JFP, Kainz B, Kuklisova-Murgasova M, Vigneswaran T, Charakida M, Miller O, Zidere V, Sharland G, Rutherford M, Hajnal J, Razavi R:MOTION CORRECTED FETAL CARDIAC MRI INCREASES DIAGNOSTIC CONFIDENCE IN CLINICALLY CHALLENGING CASES Heart 104 2018 ), p. A11-A11 ISSN: 1355-6037 10.1136/heartjnl-2017-BCCA.31
Nitschke M. , Dorschky E. , Seifer AK. , Schlarb H. , van den Bogert AJ. , Eskofier B. :Optimal Control Simulation of a 2D Biomechanical Model for Sensor-Based Gait Analysis Summer School "Humans in Motion" (Heidelberg 23. September 2018 - 28. September 2018 )https://www.mad.tf.fau.de/files/2018/10/2018_09_18_Nitschke_HumansInMotion.pdf Thürauf S. :Accurate and Efficient Calibration of a Robotic C-Arm System Based on X-Ray Observations 2018 )
2017
Blumenthal DB. , Gamper J. :Correcting and speeding-up bounds for non-uniform graph edit distance 33rd IEEE International Conference on Data Engineering, ICDE 2017 (San Diego, CA 19. April 2017 - 22. April 2017 )In: Proceedings - International Conference on Data Engineering 2017 10.1109/ICDE.2017.57 Blumenthal DB. , Gamper J. :Exact computation of graph edit distance for uniform and non-uniform metric edit costs 11th IAPR-TC-15 International Workshop on Graph-Based Representations in Pattern Recognition, GbRPR 2017 (Anacapri, ITA 16. May 2017 - 18. May 2017 )In: Pasquale Foggia, Mario Vento, Cheng-Lin Liu (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017 10.1007/978-3-319-58961-9_19 Cibis T. , McEwan A. , Sieber A. , Eskofier B. , Lippmann J. , Friedl K. , Bennett M. :Diving into Research of Biomedical Engineering in Scuba Diving IEEE Reviews in Biomedical Engineering 10 2017 ), p. 323-333 ISSN: 1937-3333 10.1109/RBME.2017.2713300 Kainz B., Bhatia K., Vercauteren T.:Preface RAMBO 2017 Springer Verlag 2017 ISBN: 9783319675633 https://www.scopus.com/record/display.uri?eid=2-s2.0-85029585297&origin=inward
Maier T. , Kamm L. :Moisture Sensor for Gravitation Dependent Plant Watering 68th International Astronautical Conference (IAC) (Adelaide, Australia 25. September 2017 - 29. September 2017 )https://www.researchgate.net/publication/319939522_Moisture_sensor_for_gravitation_dependent_plant_watering Thürauf S. , Hornung O. , Körner M. , Vogt F. , Nasseri MA. , Knoll A. :Absolute Accurate Calibration of a Robotic C-Arm System based on X-Ray Observations using a Kinematic Model ICRA 2017 Workshop C4 Surgical Robots: Compliant, Continuum, Cognitive, and Collaborative https://www.researchgate.net/profile/Sabine-Thuerauf/publication/316789798_Absolute_Accurate_Calibration_of_a_Robotic_C-Arm_System_based_on_X-Ray_Observations_using_a_Kinematic_Model/links/598b42130f7e9b07d21f62be/Absolute-Accurate-Calibration-of-a-R
2015
Thürauf S. , Hornung O. , Körner M. , Vogt F. , Nasseri MA. , Knoll A. :Evaluation of a 9D-Position Measurement Method of a C-Arm Based on X-Ray Projections MICCAI 2015 Workshop on Interventional Microscopy https://www.researchgate.net/profile/Sabine-Thuerauf/publication/293618214_Evaluation_of_a_9D-Position_Measurement_Method_of_a_C-Arm_Based_on_X-Ray_Projections/links/580f0e7f08aef766ef115909/Evaluation-of-a-9D-Position-Measurement-Method-of-a-C-Arm-B Thürauf S. , Vogt F. , Hornung O. , Körner M. , Nasseri MA. , Knoll A. :Tuning of X-Ray Parameters for Noise Reduction of an Image-Based Focus Position Measurement of a C-Arm X-Ray System IROS 2015 Workshop on Alternative Sensing for Robot Perception: Beyond Laser and Vision. https://www.researchgate.net/profile/Sabine-Thuerauf/publication/293617882_Tuning_of_X-Ray_Parameters_for_Noise_Reduction_of_an_Image-Based_Focus_Position_Measurement_of_a_C-Arm_X-Ray_System/links/580902ff08ae040813483b28/Tuning-of-X-Ray-Parameters-f
2008
Kainz B. :Automatic differentiation for GPU-accelerated 2D/3D registration 2008 Kainz B., Grabner M., Rüther M.:Fast marker based C-Arm pose estimation 11th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2008 (New York, NY 10.1007/978-3-540-85990-1_78
Reiter G., Reiter U., Kovacs G., Kainz B., Schmidt K., Maier R., Olschewski H., Rienmueller R.:Magnetic resonance-derived 3-dimensional blood flow patterns in the main pulmonary artery as a marker of pulmonary hypertension and a measure of elevated mean pulmonary arterial pressure. Circulation. Cardiovascular genetics 1 2008 ), p. 23-30 ISSN: 1942-3268 10.1161/CIRCIMAGING.108.780247
Kainz B. :Realtime 3D graphics programming using the Quake3 engine Proceeding CGEMS: Computer graphics educational materials source